PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0045ss01540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 288aa    MW: 32155.4 Da    PI: 6.5965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0045ss01540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.4e-203282256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+t eeAa a+++a+ kl+ge
  Vang0045ss01540.1 32 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTGEEAALAYDNAAFKLRGE 82
                       59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.85E-333191No hitNo description
PROSITE profilePS5103222.9193289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-313290IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-233290IPR016177DNA-binding domain
SMARTSM003805.9E-383295IPR001471AP2/ERF domain
PfamPF008477.7E-153382IPR001471AP2/ERF domain
PRINTSPR003678.5E-113344IPR001471AP2/ERF domain
PRINTSPR003678.5E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVYSTQRENR TQLGPKRVLM KHGGAAAKAT KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG  60
TFDTGEEAAL AYDNAAFKLR GEFARLNFPH LRHQGAFVFG EFGDYKPLPS SVDSKLQAIC  120
ESLAKQEQQK TCCSVEDVKP EVHTAAELAR VESDVVQSNV CPEFDNFKVE NGNDNPMLSS  180
PVSGESSSPE SGVTFLDFSD FAHSNYEWDE MESFGLEKYP SGYVWVSLAA SAMEFLTFAD  240
VLRKHGLQIF GSEIREGGRV HGLHGLPVFF VTCMTMGPFY SCLCSML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-213189160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507063.11e-136PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotQ8H1E49e-62RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0L9TKK31e-153A0A0L9TKK3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QYG41e-153A0A0S3QYG4_PHAAN; Uncharacterized protein
STRINGGLYMA05G31370.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-62related to AP2 4